Running de novo on trimmed RBC libraries (combined). Also in mysql folder there in "nonSigenae_denovo". Running on BFX nodes 1,3,4. node 2 busy on de novo.
error =
bigfish:~ safs$ mpiexec -np 4 -host localhost,node001,node004,node003 /common/clcbfxcell/blastall_cell_mpi -c cell_sw -v 1 -a 12 -b 1 -p blastx -m 8 -i /Volumes/bigfishRAID/Users/safs/Dropbox/Cluster/tmp/RBCnonSigenae_denovo.fa -d /common/clcbfxcell/databases/swissprot.fasta > /Volumes/bigfishRAID/Users/safs/Dropbox/Cluster/tmp/RBCnonSigenae_denovo_swiss2.txt
[node001:73394] *** Process received signal ***
[node001:73394] Signal: Segmentation fault (11)
[node001:73394] Signal code: Address not mapped (1)
[node001:73394] Failing at address: 0x0
[node001:73394] [ 0] 2 libSystem.B.dylib 0x00000000824543fa _sigtramp + 26
[node001:73394] [ 1] 3 blastall_cell_mpi 0x00000000006ab5e8 _ZTS24CFixClockSecureStoreFile + 567019
[node001:73394] [ 2] 4 blastall_cell_mpi 0x0000000000316313 _mh_execute_header + 3236627
[node001:73394] [ 3] 5 blastall_cell_mpi 0x000000000030d1ee _mh_execute_header + 3199470
[node001:73394] [ 4] 6 blastall_cell_mpi 0x000000000000ccad _mh_execute_header + 52397
[node001:73394] [ 5] 7 blastall_cell_mpi 0x000000000000e7f1 _mh_execute_header + 59377
[node001:73394] [ 6] 8 blastall_cell_mpi 0x000000000000ed0a _mh_execute_header + 60682
[node001:73394] [ 7] 9 blastall_cell_mpi 0x0000000000006c3b _mh_execute_header + 27707
[node001:73394] [ 8] 10 blastall_cell_mpi 0x0000000000008094 _mh_execute_header + 32916
[node001:73394] [ 9] 11 blastall_cell_mpi 0x00000000002918d2 _mh_execute_header + 2693330
[node001:73394] [10] 12 blastall_cell_mpi 0x0000000000001864 _mh_execute_header + 6244
[node001:73394] [11] 13 ??? 0x0000000000000011 0x0 + 17
[node001:73394] *** End of error message ***
[node003:94962] *** Process received signal ***
[node003:94962] Signal: Segmentation fault (11)
[node003:94962] Signal code: Address not mapped (1)
[node003:94962] Failing at address: 0x0
[node003:94962] [ 0] 2 libSystem.B.dylib 0x00000000800693fa _sigtramp + 26
[node003:94962] [ 1] 3 blastall_cell_mpi 0x00000000006ab5e8 _ZTS24CFixClockSecureStoreFile + 567019
[node003:94962] [ 2] 4 blastall_cell_mpi 0x0000000000316313 _mh_execute_header + 3236627
[node003:94962] [ 3] 5 blastall_cell_mpi 0x000000000030d1ee _mh_execute_header + 3199470
[node003:94962] [ 4] 6 blastall_cell_mpi 0x000000000000ccad _mh_execute_header + 52397
[node003:94962] [ 5] 7 blastall_cell_mpi 0x000000000000e7f1 _mh_execute_header + 59377
[node003:94962] [ 6] 8 blastall_cell_mpi 0x000000000000ed0a _mh_execute_header + 60682
[node003:94962] [ 7] 9 blastall_cell_mpi 0x0000000000006c3b _mh_execute_header + 27707
[node003:94962] [ 8] 10 blastall_cell_mpi 0x0000000000008094 _mh_execute_header + 32916
[node003:94962] [ 9] 11 blastall_cell_mpi 0x00000000002918d2 _mh_execute_header + 2693330
[node003:94962] [10] 12 blastall_cell_mpi 0x0000000000001864 _mh_execute_header + 6244
[node003:94962] [11] 13 ??? 0x0000000000000011 0x0 + 17
[node003:94962] *** End of error message ***
[node004:78793] *** Process received signal ***
[node004:78793] Signal: Segmentation fault (11)
[node004:78793] Signal code: Address not mapped (1)
[node004:78793] Failing at address: 0x0
[node004:78793] [ 0] 2 libSystem.B.dylib 0x0000000083c663fa _sigtramp + 26
[node004:78793] [ 1] 3 blastall_cell_mpi 0x00000000006ab5e8 _ZTS24CFixClockSecureStoreFile + 567019
[node004:78793] [ 2] 4 blastall_cell_mpi 0x0000000000316313 _mh_execute_header + 3236627
[node004:78793] [ 3] 5 blastall_cell_mpi 0x000000000030d1ee _mh_execute_header + 3199470
[node004:78793] [ 4] 6 blastall_cell_mpi 0x000000000000ccad _mh_execute_header + 52397
[node004:78793] [ 5] 7 blastall_cell_mpi 0x000000000000e7f1 _mh_execute_header + 59377
[node004:78793] [ 6] 8 blastall_cell_mpi 0x000000000000ed0a _mh_execute_header + 60682
[node004:78793] [ 7] 9 blastall_cell_mpi 0x0000000000006c3b _mh_execute_header + 27707
[node004:78793] [ 8] 10 blastall_cell_mpi 0x0000000000008094 _mh_execute_header + 32916
[node004:78793] [ 9] 11 blastall_cell_mpi 0x00000000002918d2 _mh_execute_header + 2693330
[node004:78793] [10] 12 blastall_cell_mpi 0x0000000000001864 _mh_execute_header + 6244
[node004:78793] [11] 13 ??? 0x0000000000000011 0x0 + 17
[node004:78793] *** End of error message ***
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mpiexec noticed that process rank 1 with PID 73394 on node node001 exited on signal 11 (Segmentation fault).
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restarted